PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02671.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CPP
Protein Properties Length: 505aa    MW: 54144.9 Da    PI: 7.2069
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02671.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.41.4e-1387125241
                      TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                              +kk+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ +
  Rsa1.0_02671.1_g00002.1  87 KKKHCNCKHSRCLKLYCECFASGTYCDG-CNCLNCCNNVD 125
                              689*************************.********986 PP

2TCR51.32.3e-16171210140
                      TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                              k++kgC+Ckks ClkkYCeCf+a+  Cs++C+C +CkN e
  Rsa1.0_02671.1_g00002.1 171 KHHKGCHCKKSGCLKKYCECFQANILCSDNCRCLGCKNFE 210
                              589***********************************65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-1386126IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.61887211IPR005172CRC domain
PfamPF036381.3E-988123IPR005172CRC domain
SMARTSM011147.8E-20171212IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.3E-13174209IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MGEGDELPPK MEVSEELDAP TKKTARQLDF AGGSVEVNQA HATSISATVA TPTQHLQSQG  60
PIRLPKPESP KPKPRPLVEA GDGTPLKKKH CNCKHSRCLK LYCECFASGT YCDGCNCLNC  120
CNNVDNEPAR REAIESTLER NPNAFRPKIA SSPHDARDNK EVVGGVVMLG KHHKGCHCKK  180
SGCLKKYCEC FQANILCSDN CRCLGCKNFE GSEDRLALFH GEHSHGAAYL QHANAAITGA  240
VGSSGFASSP APKRRKAQDI FFNQGAKDSS INRLGQGSSG KTTSSKPVSG RGGPSKVVYR  300
SLLADIIQPQ DVKALCSVLV AVSEVAAKTS TEKRLEDQSE TSLASSAQDN NNGAEIEKAV  360
SGNEPGAEES SSDGSKGKSL SPETLALMCD EQDTMLMVAA SSNCSVEPPK GQELVYAEQE  420
KIVLTKFRDC LNRIISYAEL KESKYSLSRM DIESPIHAAV KVEPVVEQGA VANGVSQTTI  480
QQPSQLTSSY TQTQQPQALS EKKDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595507.10.0PREDICTED: protein tesmin/TSO1-like CXC 6
SwissprotQ9SL700.0TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBLA0A0D3D2D50.0A0A0D3D2D5_BRAOL; Uncharacterized protein
STRINGBra041042.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17832884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.10.0Tesmin/TSO1-like CXC domain-containing protein